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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttatgatttgtataatggcctgttaaacttaccctttttattgtaacgaaatttcttatttgaaatacttttctattttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACTTGATGACAACAATCAATTTTCCGTACCTCTTCTCACCTGGTTTTATT

Basic information

species Glycine max
transcript GLYMA17G32030.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270080|gb|BM886336.1|BM886336
EST:     GGGAAAACTAGTGGTCTTAATAGCTTTGACCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
EST: gi|151409838|gb|EV279646.1|EV279646
EST:     GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
EST: gi|17022709|gb|BM093743.1|BM093743
EST:     GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG                         GTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT
genomic: GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATGgtaagcttat ... tttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctttttattgtaacgaaatttcttatttgaaatacttttctattttattatagGTATTATATGTGGGCCTGTTTTGCTCATCTGGACATTTGTTCGTGGTGACTTGATGACAACAATCAATTTTCCGTACCTCTTCTCACCTGGTTTTATT
         ttgtaac  putative branch site (score: 2)
                                    cttttctattttatt  putative PPT
                 aaatttcttatttgaa  TA-rich tract