1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctaaaagattgaattttagatcacttgcctgtttctagatactcttctttccagatctggaggtttcattgtctcttcttttttaatgttaatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTGGTTGGAAG
species | Glycine max |
transcript | GLYMA17G17790.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CNNNNNNNNATGGTCACGACCACCATGATCAGCTTGTCAAAATAGCTAAG GTGCTTGGGACAGATGAACTGEST: gi|16345458|gb|BI971053.1|BI971053
genomic: CTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGgtaacattta ... taatccgcagGTGCTTGGGACAGATGAACTG
EST: CNNNNNNNNATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAG GTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGEST: gi|15000106|gb|BI320920.1|BI320920
genomic: CTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGgtaacattta ... taatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAG
EST: CTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAG GTGCTTGGGACTGATGAACTGAACGCATATCTGAATAAGTATCATCTGGAGEST: gi|16283183|gb|BI945415.1|BI945415
genomic: CTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGgtaacattta ... taatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAG
EST: CTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTCAAAATAGCTAAG GTGCTTGGGACTGATGAACTGAACGCATATCTGAATAAGTATCATCTGGAGEST: gi|151412099|gb|EV281911.1|EV281911
genomic: CTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGgtaacattta ... taatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAG
EST: CNNNNNNNNATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAG GTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGEST: gi|58018593|gb|CX705335.1|CX705335
genomic: CTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGgtaacattta ... taatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAG
EST: CNNNNNNNNATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAG GTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAG
genomic: CTTTTTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGgtaacattta ... taatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAG
ttctttccagatctggaggtttcattgtctcttcttttttaatgttaatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTGGTTGGAAG
tgttaat putative branch site (score: 3)
ttcttttttaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctaaaagattgaattttagatcacttgcctgtttctagatactcttctttccagatctggaggtttcattgtctcttcttttttaatgttaatccgcagGTGCTTGGGACAGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTGGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - cacttgc
- - - - - - - - - - - - - - -ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - -ctttcca