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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttatacttatatttggctacagtattggtgtagaagcaactaaaaagagatgatgatggggaatttgattgataatcttttttccctcatgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAG

Basic information

species Glycine max
transcript GLYMA17G17520.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734981|gb|BM528497.1|BM528497
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|9564123|gb|BE473632.1|BE473632
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTTGGACAGA
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGA
EST: gi|21887281|gb|BQ740494.1|BQ740494
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|17963627|gb|BM270374.1|BM270374
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|13478623|gb|BG508028.1|BG508028
EST:     ATTCTTTTATGGACATGATAACTATGATCAACTTGGTCAAA-TAACTTAG                         GTACTTGGGACAGAT
genomic: ATTCTTTTATGGACATGATAACTATGATCAACT-GGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGAT
EST: gi|14260055|gb|BG882963.1|BG882963
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGACGGATTAAGTGCATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
EST: gi|9565463|gb|BE474972.1|BE474972
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAT                         GTACTTGGGACAGA
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGA
EST: gi|254330876|gb|GR842141.1|GR842141
EST:     CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAG                         GTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG
genomic: CATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGgtaagggaag ... catgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagagatgatgatggggaatttgattgataatcttttttccctcatgcaatagGTACTTGGGACAGATGAATTAAGTGTATATTTAGATAAGTATCGAATAGAGTTGGACCCTCATCTTGCAGCACTTATCGGGAG
                                 tcttttttccctcatg  CT-rich tract
                   aatttgattgataatc  TA-rich tract