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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggctgtggatttcatttttctccatattaatatttgctaggttgcccgcatgctaactagtttgtgaatttagGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTCTGAATGACAAGATTGGTCT

Basic information

species Glycine max
transcript GLYMA17G16630.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16630.3 (Glycine max), 3'ss of exon 6
lower sequence: AT5G46630.2 (Arabidopsis thaliana), 3'ss of exon 6
----------gtgggctgtggatttcattt---ttctccatattaat-atttgctaggttgcccgcatgctaactagtttgtgaat--ttagGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTCTGAATGACAAGATTGGTCT
          |     | || | ||  ||    || ||  | ||  | |||||||  ||    |   |  |   |  | ||  ||   ||||| | |||||| || |||||||| || |||||| || | ||||| || || ||||| |||||||||||||| ||||||||  ||||||| || ||||||||
gtaaataattgccttttatgaagttttttgaagttgtctttcttgttgatttgctgtgtatgactggttttgcattttatggaaacggttagGCAATGTTCTTCGGTGTGATGTGACGGGGAAGGTTTTAATGAAATGTTTCCTTTCGGGAATGCCTGATTTGAAGTTGGGGTTGAATGATAAAATTGGTCT

upper sequence: GLYMA17G16630.3 (Glycine max), 3'ss of exon 6
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 3'ss of exon 6
------------------------gtgggctgtggatttcatttttctccatat-taatatttgctaggttgcccgcatgctaactagtttgtgaatttagGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTCTGAATGACAAGATTGGTCT
                        |   |||   | |    || | |   || | | || |  ||  |  | |   | ||     | |||||    |  ||| | |  | |||||||||| || ||||| |||||| | ||||||||||| ||||| |||||||| ||| | ||  | || || || ||||| || || ||
acttatttatttctttatttattggaaagcttcaggtggt-ttatgcatgatgtatcatctcagcctgagtacaatcttgaacggttgtttggtgttgcagGAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCCTTTCGGGAATGCCGGATCTGAAACTTGGACTCAACGACAAAATAGGACT

upper sequence: GLYMA17G16630.3 (Glycine max), 3'ss of exon 6
lower sequence: EFJ22278 (Selaginella moellendorffii), 3'ss of exon 6
gtgggctgtggatttcatttttctccatattaatatttgctaggttgcccgcatgctaactagtttgtgaatttagGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTCTGAATGACAAGATTGGTCT
                |     ||    | | | |  | || | |||     || ||  ||  ||| ||    |||| |   | ||  | || || || || ||||||||||| |||||||||||||| || || ||||||||||||||| | || || || ||||| || || ||
--------------gtaaggcgcttgccactgaaaagtccttg-ttggaaatattcttccttctttatg----tagGGACAATCCTCAGATGCGACGTAACAGGGAAGATTCTCATGAAGTGCTTTCTATCGGGCATGCCTGATTTAAAGCTCGGGCTCAACGACAAAATAGGACT

upper sequence: GLYMA17G16630.3 (Glycine max), 3'ss of exon 6
lower sequence: EFJ25669 (Selaginella moellendorffii), 3'ss of exon 6
gtgggctgtggatttcatttttctccatattaatatttgctaggttgcccgcatgctaactagtttgtgaatttagGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTCTGAATGACAAGATTGGTCT
                |     ||    | | | |  | || | |||     || ||  ||  ||| ||    |||| |   | ||  | || || || || ||||||||||| |||||||||||||| || || ||||||||| ||||| | || || || ||||| || || ||
--------------gtaaggcgcttgccactgaaaagtccttg-ttggaaatattcttccttctttatg----tagGGACAATCCTCAGATGCGACGTAACAGGGAAGATTCTCATGAAGTGCTTTCTATCGGGCATGCCTGATCTAAAGCTCGGGCTCAACGACAAAATAGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctccatattaatatttgctaggttgcccgcatgctaactagtttgtgaatttagGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTCTGAATGACAAGATTGGTCT
                                tgctaac  putative branch site (score: 1)
     atattaatatttgcta  TA-rich tract