1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtctttgatttctacaaataaaaaaaaattaacatgtggtatttccttttgctttaattattcttagataccataccataacgaaattctatgtgtatagGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTTGGGTACTGGCCAGCATACTTGTTTAGTCACTTGAGAAACCATGCAAGCA
species | Glycine max |
transcript | GLYMA17G09450.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATCCATCTACAATGGCAGACAATTTGATATTGGATTAATGGTTTGGAAG GACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTTEST: gi|18732382|gb|BM527014.1|BM527014
genomic: GATCCATCTACAATGGCAGACAATTTGATATTGGATTAATGGTTTGGAAGgtgagtcttt ... atgtgtatagGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTT
EST: GATCCATCTACAATGGCAGACAATTTGATATTGGATTAATGGTTTGGAAG GACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTT
genomic: GATCCATCTACAATGGCAGACAATTTGATATTGGATTAATGGTTTGGAAGgtgagtcttt ... atgtgtatagGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTT
cttttgctttaattattcttagataccataccataacgaaattctatgtgtatagGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTTGGGTACTGGCCAGCATACTTGTTTAGTCACTTGAGAAACCATGCAAGCA
ccataac putative branch site (score: 3)
tttaattattcttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttgatttctacaaataaaaaaaaattaacatgtggtatttccttttgctttaattattcttagataccataccataacgaaattctatgtgtatagGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGGTCGGGGCTTCTAGTTGGGTACTGGCCAGCATACTTGTTTAGTCACTTGAGAAACCATGCAAGCA
gtctttg
- - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - -acatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatacc