1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttattgtccttatatttatgatggttactggcttcttggtttttaacatttgacgataaattgtctccctttgagaagtgctattttttaactaccgaccaaatgcttaatgatcagttatagtaagaatggttttagttgtgacccattttaagctctggactgagttatattttgcttgtgattttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCTGCCTTTGTGCTCACTTCAGCTGGGCATTATGAGGCAATTACTAGGAACT
species | Glycine max |
transcript | GLYMA17G07920.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAG GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCTEST: gi|120495909|gb|EH224076.1|EH224076
genomic: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
EST: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAG GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCTEST: gi|51343344|gb|CO984077.1|CO984077
genomic: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
EST: TCAACTTGAAAAGCAG GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCTEST: gi|120496031|gb|EH224198.1|EH224198
genomic: TCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
EST: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAG GCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
genomic: AAATAGACCAGGTCAAAACTTATTACAATAAGCATCAACTTGAAAAGCAGgtaatttatt ... tttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCT
gtgacccattttaagctctggactgagttatattttgcttgtgattttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCTGCCTTTGTGCTCACTTCAGCTGGGCATTATGAGGCAATTACTAGGAACT
agttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttattgtccttatatttatgatggttactggcttcttggtttttaacatttgacgataaattgtctccctttgagaagtgctattttttaactaccgaccaaatgcttaatgatcagttatagtaagaatggttttagttgtgacccattttaagctctggactgagttatattttgcttgtgattttggtgcagGCAAATAAAGAGAAGATTTGTTTTGGTTGCCTGGAAGTTCACGAGATAGCTGCCTTTGTGCTCACTTCAGCTGGGCATTATGAGGCAATTACTAGGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG