1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tacatggtaaagcaaatatatggatgttagttccccttgtatactttatatactcactattcaaactgtattgctaaaatatgcataatggcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGTTGCTAGATTCTTCACTTATGAAGTATAGCCCCACGGATTGCCAGAGACC
species | Glycine max |
transcript | GLYMA17G06740.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCAC CTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGTEST: gi|193641520|gb|FK589042.1|FK589042
genomic: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttc ... gcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
EST: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCAC CTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGTEST: gi|208296352|gb|GE093974.1|GE093974
genomic: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttc ... gcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
EST: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCAC CTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
genomic: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttc ... gcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
ttatatactcactattcaaactgtattgctaaaatatgcataatggcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGTTGCTAGATTCTTCACTTATGAAGTATAGCCCCACGGATTGCCAGAGACC
taaaatatgcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatggtaaagcaaatatatggatgttagttccccttgtatactttatatactcactattcaaactgtattgctaaaatatgcataatggcttgtacagCTTCCACACATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGTTGCTAGATTCTTCACTTATGAAGTATAGCCCCACGGATTGCCAGAGACC
- - - - - - - - - - tggatgt
- - - - - - - - - - - - - - - ttcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa