1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gatcaaaattgcggccatcctgctaccgctatagtgttttgggaggctgaccgccacgcactgctatccactattgactactttggcttgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
species | Glycine max |
transcript | GLYMA17G05530.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTACAGATGCCACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTC TGATGCAAGGGEST: gi|208092308|gb|GD889373.1|GD889373
genomic: GTTACAGATGCCACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGG
EST: GTTACAGATGCCACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTC TGATGCAAGGGTAAEST: gi|11274392|gb|BF324745.1|BF324745
genomic: GTTACAGATGCCACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGGTAA
EST: TTACAGATGCCACATTGTATGCTTGCTTCTGTGTATATGCCTA-TTGGTC TGATGCAAGGGTAATGTGGGATCAGAAEST: gi|208171149|gb|GD967892.1|GD967892
genomic: TTACAGATGCCACATTGTATGCTTGCTTCTCTGTATAT-CCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGGTAATGTGGGATCAGAA
EST: GTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTC TGATGCAAGGGTAATGTGGGATCAGGAGACAGGCCGTTCCAGGGGATTTGG
genomic: GTTACAGATGCCACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
gctgaccgccacgcactgctatccactattgactactttggcttgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
tattgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcaaaattgcggccatcctgctaccgctatagtgttttgggaggctgaccgccacgcactgctatccactattgactactttggcttgttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
- - - - -tgcggcc
- - - - - - - - - - tgctacc
- - - - - - - - - - - - - - - - - - - - gggaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatc