Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggctgaacatttaatgcctcctttttctgaacctttttttgcactccatcctccttttgctaattgagtgctaaaaaatagatcatctcgatactctctttttctaactccttttgtctgtactgtgtttagTGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATT

Basic information

species Glycine max
transcript GLYMA17G05490.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05490.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G22850.1 (Arabidopsis thaliana), 3'ss of exon 6
gttaggctgaacatttaatgcctcctttttctgaacctttttttgcactccatcctccttttgctaattgagtgctaaaaaatagatcatctcgatactctctttttctaactccttttgtctgtactgtgtttagTGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATT
                                    || |  |   ||  |||| || || | | ||    ||  |   || | |   |  |    ||| | || || ||           ||||    || | ||||||   ||  | ||||||| ||| ||  |||||||||||||||| ||||||||| | || |  |||||||| ||||| |||||||||||     | 
----------------------------------gtctatcctctgaccacatcttc-ttatcccaagcatgtcttcttaattggtaaacatttgaacttttttattgta-----------ctgtg--atgatcagTGTCGGAGACATATTTCCTCCAGTTAGCTTGAACTTTGCTGGTGGAGCATCTATGTTCTTGAATCCTCAGGATTACCTCATACAGCAGAACAATGTC

upper sequence: GLYMA17G05490.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 3'ss of exon 6
gttaggctgaacatttaatgcctcctttttctgaacctttt-tttgcactccatcctccttttgctaattgagtgctaaaaaatag--atcatctcgatactctctttttctaactcct-----tttgtctgtactgtgtttagTGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATT
                      |||| |||||  |  | |  ||| || | | |  ||   |||     | ||  ||  | | |    ||| | |  | |||   ||| |  |  |||      | ||||| | |||| || |||||||  |   | ||||||  ||| ||| |||||||||||||||||| |||||||| | |||  ||| ||||||||||  |||||||||||||||||
---------------------gtcctctttctagatttatgattttcagttc-ttatctggttgaccgctcagccctgcatagttattatcttttgcagactaattttcttaacatccaaaatgtatgtctattctgtattcagTGTCAAGGGTATATTTCCTACAGTCAGTTTGAACTTTGCTGGTGGTGTATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8282905|gb|BE020466.1|BE020466
EST:     GTACACACTGTTGTTTCCAGGGGAAATCAGTGTTATTTAATCACATTCAG                         TGTCACTGAAGTTTTT
genomic: GTACACACTGTTGTTTCCAGGGGAAATCAGTGTTATTTAATCACATCCAGgttaggctga ... ctgtgtttagTGTCACTGAAGTTTTT
EST: gi|16345079|gb|BI970674.1|BI970674
EST:     GTACACACTGTTGTTTCCAGGGGAAATCAGTGTTATTTAATCACATCCAG                         TGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACNNNGCTGGTGGTGCATC
genomic: GTACACACTGTTGTTTCCAGGGGAAATCAGTGTTATTTAATCACATCCAGgttaggctga ... ctgtgtttagTGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagatcatctcgatactctctttttctaactccttttgtctgtactgtgtttagTGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATT
                        ttctaac  putative branch site (score: 1)
                     tttttctaa  TA-rich tract