1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttgatcatgcaacaatttatctagtatagggcgaagaagaaatgaaaagaaaggattttgctgactttttcatgttttatttgtgcacatttttccagAAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTTCGTAAAATCATAGCTCACATGGTCACATTCTTCTTCTACTGTGTGGTGC
species | Glycine max |
transcript | GLYMA17G05350.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAATGGTGATGGAGATAGTAAGGAACAAG AAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTTEST: gi|298195915|gb|HO044306.1|HO044306
genomic: CAAAATGGTGATGGAGATAGTAAGGAACAAGgttagccttt ... atttttccagAAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTT
EST: TCCGCAAAATGGTGATGGAGATAGTAAGGAACAAG AAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTT
genomic: TCCGCAAAATGGTGATGGAGATAGTAAGGAACAAGgttagccttt ... atttttccagAAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTT
gaaaagaaaggattttgctgactttttcatgttttatttgtgcacatttttccagAAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTTCGTAAAATCATAGCTCACATGGTCACATTCTTCTTCTACTGTGTGGTGC
tgctgac putative branch site (score: 2)
catttttcc putative PPT
tttttcatgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgatcatgcaacaatttatctagtatagggcgaagaagaaatgaaaagaaaggattttgctgactttttcatgttttatttgtgcacatttttccagAAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTTCGTAAAATCATAGCTCACATGGTCACATTCTTCTTCTACTGTGTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - tcatgca
- - - - - - - - - - - - - - - - - -aagaagaa
- - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc