1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttcccacaggacttaattggatggggaactcaggaaagatatataggtgtattcacatttggttggggcaattcctgatgtttttcttgatgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGA
species | Glycine max |
transcript | GLYMA17G03010.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTATCTGGACTCACTGAGAGGAACAGATGCCCGAGTGATGAAAATTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATEST: gi|207843106|gb|GD815056.1|GD815056
genomic: AGTATCTGGACTCACTGAGAGGAACAGATGCCCGAGTGATGAAAATTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
EST: AACAGATGCCCGAGTGATGAAAATTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATEST: gi|209713561|gb|BW679311.1|BW679311
genomic: AACAGATGCCCGAGTGATGAAAATTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
EST: AGTATCTGGACTCACTGAGAGGAACAGATGCCCGAGTGATGAAAATTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATEST: gi|16343144|gb|BI968739.1|BI968739
genomic: AGTATCTGGACTCACTGAGAGGAACAGATGCCCGAGTGATGAAAATTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
EST: AGTATCTGGACTCACTGAGAGGAACAGATGCCCGAGTGATGAAAATTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
genomic: AGTATCTGGACTCACTGAGAGGAACAGATGCCCGAGTGATGAAAATTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
ggtgtattcacatttggttggggcaattcctgatgtttttcttgatgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGA
atgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccacaggacttaattggatggggaactcaggaaagatatataggtgtattcacatttggttggggcaattcctgatgtttttcttgatgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
ttcccac
- - - - - - - - - ggatggg
- - - - - - - - - - - - - - - - - - - - - - - - - attcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcctg