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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattctaaattccattacttttgaatatgcttaaccacaacaatgaaatatcccagtacactgttggccattattccctaattcctttactgacaaatcccagGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAA

Basic information

species Glycine max
transcript GLYMA17G02560.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02560.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 3'ss of exon 7
gttaattctaaattccattacttttgaatatgcttaaccacaacaatgaaatatcccagtacactgttggccattattccctaattcctttactgacaaatcccagGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAA
                       ||   || ||  || || | |      |  |  | ||    || |     |||      |      ||  ||||  || ||||||||||||| |||||||||||||| || ||| | |||||||| |||||||||||||||||  |||| 
----------------------gttagttaagcccaaacaaaccctcattagttaacggttttatgctcagtgttaacttgga----tgttggtgactgattccagGCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAG

upper sequence: GLYMA17G02560.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 8
gttaattctaaattccattacttttgaatatgctta-accacaacaatgaaatatcccagtacactgttggccattattccctaattcctttactgacaaatcccagGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAA
             ||   | || |   || |  | |  |||||     |     |     |  |    ||   || |||     |  | | |  ||  |     ||| || || || ||| | || |||||| ||||| |||||||||| ||||||||||||||||| ||    
------------gtctgctcctatgtgatttagtcatgccacagagtagtttgttttttatgtagatatgaaaatcattgtggcaagcttgtgatgttatg---cagACACTCAACTGACAGAGAAGTTGCTATCATGATACTCATGGCGTACCTTTCATATATGCTGTCGATG

upper sequence: GLYMA17G02560.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 8
gttaattctaaattccattacttttgaatatgcttaaccaca-acaatgaaatatcccagtacactgttggccattattccctaattcctttactgacaaatcccagGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAA
||     |    |          || | |    || ||   | || |  |||     ||  ||||  |||   |||| |   | || | | |  ||||      ||| ||||| || ||  | || ||| || ||||| |||||||||||||||||||||| ||| ||||    
gtctgcgcactctgtgggggtagtttattgcattttactttagactacaaaa-----caacacacatttgaaaattactgtttcatgcttgtggtgacgtg---cagACATTCAACTGATAGAGAAGTTTCTATCATGATACTCATGGCATACCTTTCATACATGATATCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcccagtacactgttggccattattccctaattcctttactgacaaatcccagGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCATATATGCTATCTGAA
                                       tactgac  putative branch site (score: 1)
                     attatt  TA-rich tract