Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaatttccatccatctgctattgactttccacacatcatgtttagttttaatgggaatattgtgtatgatataattagGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCCCAGCCAGTTACCAAGATAGAATTTGAATTCGAGAGACATAGGA

Basic information

species Glycine max
transcript GLYMA17G02220.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02220.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 6
------------------------------gttgaatttccatccatctgct---attgactttccacacatcatgtttagttttaatgggaatattgtgtatgatataattagGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCCCAGCCAGTTACCAAGATAGAATTTGAATTCGAGAGACATAGGA
                                |||||     |   ||||     |   ||||   | | |  |   ||| | | |  |    |||  ||    || |  | ||||||| |||||| | ||||||||||| || ||||||||||||||||| || ||||| || |||||||||||| | ||||||||||| |||||    ||||
gtactatctgcttgcttaatatcttgttacagtgaatggtacttattctgactgaacctacttataaaaaaaaaaccttattctgaccgaacctatcatgctgcatgttttcagGCTCTTGCAGATCCATATTTTAAAGGTTTAGCCAAGGTTGAGAGAGAACCCTCTGCTCAACCAGTTACCAAGTTGGAATTTGAATTTGAGAGGAGAAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022468|gb|BM093502.1|BM093502
EST:     TACAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAG                         GCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCT
genomic: TACAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGgttgaatttc ... atataattagGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttccacacatcatgtttagttttaatgggaatattgtgtatgatataattagGCTCTAGCAGATTCTTATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAGCCTTCTGCCCAGCCAGTTACCAAGATAGAATTTGAATTCGAGAGACATAGGA
                                aatattgtgtatgata  TA-rich tract