1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaacgtgtttgcgcatatgaattcttgcatgctagaagtttagaatccctttggttataatatatatgtctatgaaatattgtaatagATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATTGCACGTAATGCTTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGTGTGAG
species | Glycine max |
transcript | GLYMA17G01920.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAG ATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATEST: gi|10846376|gb|BF069285.1|BF069285
genomic: TTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAGgtaaacgtgt ... attgtaatagATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGAT
EST: TTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAG ATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATEST: gi|298186997|gb|HO034090.1|HO034090
genomic: TTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAGgtaaacgtgt ... attgtaatagATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGAT
EST: TTCTCCTTCTCTGAGTCCTTCAAGTCCAAACTTTCTGCTGCTTCAGCTAG ATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGAT
genomic: TTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAGgtaaacgtgt ... attgtaatagATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGAT
agaagtttagaatccctttggttataatatatatgtctatgaaatattgtaatagATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATTGCACGTAATGCTTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGTGTGAG
ttataatatatatgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacgtgtttgcgcatatgaattcttgcatgctagaagtttagaatccctttggttataatatatatgtctatgaaatattgtaatagATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATTGCACGTAATGCTTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGTGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA