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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatccatctatgttgtcaggcatttgtttttatgtttaattttttttctacttctgttttatcacccttttttgccttctttttctttttctatttacaaaattgtagATTAATTTGCGGTCTCCTCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAA

Basic information

species Glycine max
transcript GLYMA17G00850.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00850.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os06g40570.1 (Oryza sativa), 3'ss of exon 4
gtaaggatccatctatgttgtcaggcatttgtttttatgtttaattttttttctacttctgttttatcacccttttttgccttctttttctttttctatttacaaaattgtagATTAATTTGCGGTCTCCTCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAA
                                | |    || |     | || |  |    |||| || || |   |||   | ||| | |  |   |     ||   || |||| |||||||||||| | ||||||||| |||| |||| ||||||||||   || ||||| || || ||||||||| |||| || ||||| ||| | ||| 
-------------------------------gtatcgaattgagcagctcttttgttggcctttt-tcgccatcacttgttctatttctataatgacagaacaaatcatgcagATAAATTTGCGGTCTGCCCAAACAAATGCAGCATTTCGGAAACTCTTTAACCTCCCACCGGAAGAGTTTCTCATCGATGATTTTACCTGCCATCTAAAAC

upper sequence: GLYMA17G00850.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G03370.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaggatccatctatgttgtcaggcatttgtttttatgtttaattttttttctacttctgttttatcacccttttttgccttctttttctttttctatttacaaaattgtagATTAATTTGCGGTCTCCTCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAA
             ||||| |  | |  |||||| |     | ||  | |   ||  |   || || |  | | || ||  || ||   |               |||||  |||||||| ||||||||||||||||||||||||| |||||||| |||||||| || ||||  || |||||||| ||||||||||| || ||||| || ||  
------------gtatgtggctacgactttgttctctcaatcaacatataaactggt--agtgttgttgcgcgttcttatctgctgaatg-------------gaaatttcagATTAATGTGCGGTCTCCTCAAACAAATTCAGCTTTTCAGAAGCTCTTTGGTCTCCCACAAGAAGAATTTCTAATCAATGACTTTACATGTCACTTAAAGC

upper sequence: GLYMA17G00850.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0194g00100.t01 (Vitis vinifera), 3'ss of exon 4
gtaag-gatccatctatgttgtcaggcatttgtttttatgtttaattttttttctac-ttctgttttatcacccttttttgccttctttttctttttctatttacaaaat-tgtagATTAATTTGCGGTCTCCTCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAA
||||  ||      | | | |||    |||   |||        | | | ||| |   |||||  ||      ||  ||| | | ||  || |||  ||  | |||   | || |||| || ||| ||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||| || || ||||| |||||| 
gtaaatgactagcttttatggtcttaaattcactttgtgaggggactatgtttatgtgttctgactttcttgtctgatttacttgctcattatttc-ctgatgacattgtatgcagATAAACTTGAGGTCTCCTCAAACAAATTCGGCATTTCAGAAACTCTTTGGACTTCCACCAGAGGAATTTCTCATCAATGATTTTACTTGTCACTTGAAAC

upper sequence: GLYMA17G00850.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S284_21V6.1 (Physcomitrella patens), 3'ss of exon 8
------------------------------------------------------------gtaaggatccatctatgttgtcaggcatttgtttttatgtttaattttttttctacttctgttttatcaccctttt--ttgcctt---ctttttctttttctatttacaaaattgt----agATTAATTTGCGGTCTCCTCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAA
                                                            | |||    |||  |   |    |  | | | |    |    | |    |  | |    ||  || ||    |  |       |    |      |  |||||  |    ||||||    || ||    |||| ||| | || |  |||    | |||||||| || |||| ||||||| |||| || |||||||||||||||||| | |||    | || |
gtagtttgatctgtattgtctttcaagctaccatgtggcccaactaatgttcgtacatttgcaagacagcatgaactctacttga-agtcgatagagtagcaattccactcaccaaaaatgaattgtcgttgtagtaaccaggtcgaacgaaacatagttctaagtcggtaattgtgtgcagGTTGTGGTGCGTTCTGCCCAGAAGAATGGCTCATTTCAGAAGCTGTTTGCGCTTCCAGCTGAAGAGTTTCTCATCAATGACTTCGCGTGTGCCATCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttatcacccttttttgccttctttttctttttctatttacaaaattgtagATTAATTTGCGGTCTCCTCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAA
        tcacccttttttgcct  CT-rich tract
                       ttctttttctttttct  TA-rich tract