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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaattatacttgatctcttctctcatttgtacataattcagatgtggtatatatcagggaaacaaataatatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA

Basic information

species Glycine max
transcript GLYMA17G00490.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 6
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 3'ss of exon 9
aaaattatacttgatctcttctctcatttgtacataattcagatgtggtatatatcagggaaacaaataatatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
    ||   ||||   |  | ||  | |   |     ||  |  | |  |||  | |   ||||   | | | ||| | |||    ||       || |||||||||||||||| || || || ||||| ||||| ||||| || ||||| |||||||| || |||||||||||  | || ||||| || |  || | ||
---gttggtcttg---ttgtttcaaagtctcaagagttttcgccgagacatacttgattaaaac---tcacaaactgataatgggatt-------catagGCAATTGAAGCAGCGATAGAGCTTAATCTGAAAACGGTAGAAGCTGGAGCGCAGGGTGAGCATAAGATTCAGCGAGGCTACCTTCCCGTTAAAACATATA

upper sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 10
aaaattatacttg-atctcttctctcatttgtacataattcagatgtggtatatatcagggaaacaaataa-tatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
  | | ||   || ||  |  |    |   ||    |  | |  ||    | |  | |   |||    |   | || ||    | | ||  |    ||||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||| ||||| || |||||||||||  | ||| | |||||||| ||||  |
--attcattagtgtataacgacataaagaagtgagaatgtgaactgcttgaaaagtgatataaatttgtttctttattttatgtgtggtgatattatcacagGCAATAGAAGCAGCTATTGAACTTAATCTGAACAAAGTAGAGGCAGGAGCTCAAGGTGAGCATAAGATTCAGCGTGGCTATATGCCTGTGACAACTTACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtatatatcagggaaacaaataatatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
               aaacaaataatatact  TA-rich tract