Sequence
atgc intronic sequence ATGC exonic sequence...aaaattatacttgatctcttctctcatttgtacataattcagatgtggtatatatcagggaaacaaataatatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
Basic information
species | Glycine max |
transcript | GLYMA17G00490.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 6
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 3'ss of exon 9
aaaattatacttgatctcttctctcatttgtacataattcagatgtggtatatatcagggaaacaaataatatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
|| |||| | | || | | | || | | | ||| | | |||| | | | ||| | ||| || || |||||||||||||||| || || || ||||| ||||| ||||| || ||||| |||||||| || ||||||||||| | || ||||| || | || | ||
---gttggtcttg---ttgtttcaaagtctcaagagttttcgccgagacatacttgattaaaac---tcacaaactgataatgggatt-------catagGCAATTGAAGCAGCGATAGAGCTTAATCTGAAAACGGTAGAAGCTGGAGCGCAGGGTGAGCATAAGATTCAGCGAGGCTACCTTCCCGTTAAAACATATA
upper sequence: GLYMA17G00490.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 3'ss of exon 10
aaaattatacttg-atctcttctctcatttgtacataattcagatgtggtatatatcagggaaacaaataa-tatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
| | || || || | | | || | | | || | | | | ||| | | || || | | || | ||||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||| ||||| || ||||||||||| | ||| | |||||||| |||| |
--attcattagtgtataacgacataaagaagtgagaatgtgaactgcttgaaaagtgatataaatttgtttctttattttatgtgtggtgatattatcacagGCAATAGAAGCAGCTATTGAACTTAATCTGAACAAAGTAGAGGCAGGAGCTCAAGGTGAGCATAAGATTCAGCGTGGCTATATGCCTGTGACAACTTACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtatatatcagggaaacaaataatatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
aaacaaataatatact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaattatacttgatctcttctctcatttgtacataattcagatgtggtatatatcagggaaacaaataatatacttacaattttgttttgacgtcacagGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTA
- - - - - - - - - - - - - - - - - - - - -gatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa