1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...accttgagcctcttaagcatacaaattcctttattgtgttgtacctaatcatcctgatagtactagttcatctaatccttttgattggtttcaattgcagCCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAACCCAAAGCCCTTGCAGCAGTGCAGGCTCTCCTATTGAACCAGGGACCCCC
species | Glycine max |
transcript | GLYMA17G00480.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATTTCAACATCACGAGCCCTTAGAGTTGCTAAGGAGTATGATGCAGAAT CCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAACEST: gi|207843233|gb|GD816835.1|GD816835
genomic: AATTTCAACATCACGAGCCCTTAGAGTTGCTAAGGAGTATGATGCAGAATgtaagttttc ... tcaattgcagCCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAAC
EST: AATTTCAACATCACGAGCCCTTAGAGTTGCTAAGGAGTATGATGCAGAAT CCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAAC
genomic: AATTTCAACATCACGAGCCCTTAGAGTTGCTAAGGAGTATGATGCAGAATgtaagttttc ... tcaattgcagCCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAAC
taatcatcctgatagtactagttcatctaatccttttgattggtttcaattgcagCCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAACCCAAAGCCCTTGCAGCAGTGCAGGCTCTCCTATTGAACCAGGGACCCCC
ttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accttgagcctcttaagcatacaaattcctttattgtgttgtacctaatcatcctgatagtactagttcatctaatccttttgattggtttcaattgcagCCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAACCCAAAGCCCTTGCAGCAGTGCAGGCTCTCCTATTGAACCAGGGACCCCC
- - - agcctct
- - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - cctgata