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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctgcatgatttaatagcaaaattcttgattttgttatattatataccgaatggacgatcagatcttagttgatttattgggcagcatattctctttttacaattttcaatattttgtattttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG

Basic information

species Glycine max
transcript GLYMA16G33380.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33380.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g08170.t01 (Vitis vinifera), 3'ss of exon 5
gtatgtttctgcatgatttaatagcaaaattcttgattttgttatattatataccgaatggacgatcagatcttagttgatttattgggcagcatattctctttttacaattttcaatattttgtattttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAA---TTCACCCTACAGTTATTTGCCGAG
                                 | | ||  |  |  |  |||   |   |        |  | | |  | ||||  |  | | | |  | | ||    ||| | || ||   | |  || | |  ||||||||||||||||||||| || || || ||||| |||||||   ||||||||||||| || || ||||
---------------------------------taaattgttattggtgaatatttagctgtttgcttcacataattcaaattat--gttatcctttaatttgttactgattgttaaaat---gaaaatttgttcaagCTGGTGAGATGCTTCATGTTGCGGAAGCTTTCATAGACAAAAACTTTCACCCTACAGTCATATGTCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16284063|gb|BI945885.1|BI945885
EST:     CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTGgtatgtttct ... ttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|16276828|gb|BI942066.1|BI942066
EST:     CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTGgtatgtttct ... ttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|16281961|gb|BI944761.1|BI944761
EST:     CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGAT
genomic: CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTGgtatgtttct ... ttcggtgcagCTGGTGAGATGCTTCATGTCGCCGAT
EST: gi|193636212|gb|FK580749.1|FK580749
EST:     CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCG
genomic: CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTGgtatgtttct ... ttcggtgcagCTGGTGAGATGCTTCATGTCGCCG
EST: gi|16278542|gb|BI942959.1|BI942959
EST:     CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATGCACCCTA
genomic: CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTGgtatgtttct ... ttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|24206236|gb|BU965489.1|BU965489
EST:     CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCGGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTGgtatgtttct ... ttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA
EST: gi|162286128|gb|FC456630.1|FC456630
EST:     CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTG                         CTGGTGAGATGCTTCATGTCGCGGATGCATTCATTGACAAAATTCACCCTA
genomic: CACCCAAGACGAAGAAGTTGGAGATGGAACAACATCTGTCATCATTCTTGgtatgtttct ... ttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgggcagcatattctctttttacaattttcaatattttgtattttcggtgcagCTGGTGAGATGCTTCATGTCGCCGATGCATTCATTGACAAAATTCACCCTACAGTTATTTGCCGAG
                                         tattttc  CT-rich tract
          atattctctttttaca  TA-rich tract