1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...accatgtttcttgaaatggaacaatatgaccagtcaattaactatatacttttatcatcaatcttgcatagggaatttatacatttgttttggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCCTCACTGTAACTGAGAGAGGTGCAATTCCTGCACTACCTACAAAGGAAG
species | Glycine max |
transcript | GLYMA16G32530.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAG GATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCEST: gi|193531919|gb|FK488449.1|FK488449
genomic: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAGgtatttttga ... tggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCC
EST: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAG GATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCEST: gi|13791256|gb|BG653847.1|BG653847
genomic: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAGgtatttttga ... tggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCC
EST: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAG GATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCEST: gi|254342487|gb|GR858649.1|GR858649
genomic: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAGgtatttttga ... tggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCC
EST: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAG GATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCEST: gi|254339782|gb|GR857907.1|GR857907
genomic: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAGgtatttttga ... tggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCC
EST: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAC GATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCEST: gi|254342488|gb|GR858650.1|GR858650
genomic: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAGgtatttttga ... tggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCC
EST: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAG GATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCC
genomic: TTGTTAGTGGGATTTTATACTGCATAGCTTCTGACCAAACTATTTTTCAGgtatttttga ... tggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCC
atacttttatcatcaatcttgcatagggaatttatacatttgttttggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCCTCACTGTAACTGAGAGAGGTGCAATTCCTGCACTACCTACAAAGGAAG
tttgtttt CT-rich tract
aatttatacatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accatgtttcttgaaatggaacaatatgaccagtcaattaactatatacttttatcatcaatcttgcatagggaatttatacatttgttttggttggcagGATGAGAAACGTCTTCGAAAGGCTTTATATTTTGCCAATGTATGTGGTGCCCTCACTGTAACTGAGAGAGGTGCAATTCCTGCACTACCTACAAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-ccatgtt
- - - - - - - - - - - - - - -ccagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcat