1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaatttgtttttagcacggttatgatcatgtatggttatgagaaagctttacttggtttagaaaattgaaccatatatgttatacaattccatatacagGAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTACAAAGAAAATGAAGCATGAAATCTATGTGATACAGGGCAATGGATTGCA
species | Glycine max |
transcript | GLYMA16G32270.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAG GAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTAEST: gi|22928149|gb|BU545288.1|BU545288
genomic: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAGgtaatagcat ... ccatatacagGAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTA
EST: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAG GAAAGGTTTAACCATATGATTACCTNNNGCAATGCAAGAGTATCTGGAGTAEST: gi|18039029|gb|BM307323.1|BM307323
genomic: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAGgtaatagcat ... ccatatacagGAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTA
EST: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAG GAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTAEST: gi|10231970|gb|BE800858.1|BE800858
genomic: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAGgtaatagcat ... ccatatacagGAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTA
EST: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAG GAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTA
genomic: TAGCAATAAAGACAAAGCCTGGATTGCAGCCGTGGCAAACAAATTTAGAGgtaatagcat ... ccatatacagGAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTA
agctttacttggtttagaaaattgaaccatatatgttatacaattccatatacagGAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTACAAAGAAAATGAAGCATGAAATCTATGTGATACAGGGCAATGGATTGCA
atatatgttatacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatttgtttttagcacggttatgatcatgtatggttatgagaaagctttacttggtttagaaaattgaaccatatatgttatacaattccatatacagGAAAGGTTTAACCATCTGATTACCTACTGCAATGCAAGAGTATCTGGAGTACAAAGAAAATGAAGCATGAAATCTATGTGATACAGGGCAATGGATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC