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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggcaagaatttcatgaactttgatgagatattccatttggtcttttcttttgaatatgccatcatgctcttaattttttcagatcctccttgcaagagGTGCAAGTCGGATGGCTTTGAACTGCAATGG

Basic information

species Glycine max
transcript GLYMA16G32090.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32090.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 7
gtcaggcaagaatttcatgaactttgatgagatattccatttggtcttttcttttg-aatatgccatcatgc-tcttaattttttcagatcctccttgcaagagGTGCAAGTCGGATGGCTTTGAACTGCAATGG
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-----gcaagaactattataacttaaactgtttctctccctagttgtgttttatcacaatttgagatgatgtgttcttatttctgcagATCCTCCTTGCAAGAGGTGCCAGTCGGTTGACTTTAAACTGCAACGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttttgaatatgccatcatgctcttaattttttcagatcctccttgcaagagGTGCAAGTCGGATGGCTTTGAACTGCAATGG
                        tcttaat  putative branch site (score: 3)
                                        tcctccttgc  putative PPT
                          ttaattttttcagat  TA-rich tract