1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtctcagccaaaaacaccgtagcttcgaagcttggttttggcgacacagcaacaacaacacaacaagagaagagaactgaccatgctgctgctcctacagAATATGGAAAAAGTGTTGCTCAGTCCCTGACAGAGAAACTAGCTCCAGTTTCTGGAAAAGATGCTGGTGTAGGAAGTGGTGTGAAGTCCAAAGTTTCTGG
species | Glycine max |
transcript | GLYMA16G31330.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
acagcaacaacaacacaacaagagaagagaactgaccatgctgctgctcctacagAATATGGAAAAAGTGTTGCTCAGTCCCTGACAGAGAAACTAGCTCCAGTTTCTGGAAAAGATGCTGGTGTAGGAAGTGGTGTGAAGTCCAAAGTTTCTGG
aactgac putative branch site (score: 2)
ctgctcct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcagccaaaaacaccgtagcttcgaagcttggttttggcgacacagcaacaacaacacaacaagagaagagaactgaccatgctgctgctcctacagAATATGGAAAAAGTGTTGCTCAGTCCCTGACAGAGAAACTAGCTCCAGTTTCTGGAAAAGATGCTGGTGTAGGAAGTGGTGTGAAGTCCAAAGTTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -tcagcca
- - - - - -aaacacc
- - - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - -caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgct