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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttaaactcctttatatggtttatcttagtgtttgttttgttattctgttacttctgtatgagtgtatattgtgttgatctttggttttcttcaaacagATTGTACCTTCCAATTGCCGATATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCGAAAGCAGAACCTATTCACTGGACATCTCTAGAATTCACCA

Basic information

species Glycine max
transcript GLYMA16G29450.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G29450.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0050g01510.t01 (Vitis vinifera), 3'ss of exon 6
atttaaactcctttatatggttta---tcttagtgtttgttttgttattctgttacttctgtatga-gtgtatattgtgttgatctttggttttcttcaaacagATTGTACCTTCCAATTGCCGATATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCGAAAGCAGAACCTATTCACTGGACATCTCTAGAATTCACCA
  || | ||  ||| | | || ||   |  |||   |   |   | |||    |  ||||| |||  | || |||  |  || | |||||||||   |||||||||  ||||   ||| ||  |||||||||| ||||| |||||||||||||| || ||||| ||||| |||   ||||| ||||| ||||| ||||||| ||
--ttgatctagtttttgtagtctagtattataggaatatctaattcatttcacttattctggatgctgagtttatcat-ctggtgtttggttttga-caaacagATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCCGACTTGCAAAAGCTGAAGAAATTCATTGGACTTCTCTTGAATTCAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5677947|gb|AI939077.1|AI939077
EST:     ATGTCCCTGGAGAAGATGTATATGCTTTTCAACCTCGCTTATTTGGAAAG                         ATTGTACCTTCCAATTGCCGATATGAAGTTTTGTCCACCAAAATTGAAATT
genomic: ATGTCCCTGGAGAAGATGTATATGCTTTTCAACCTCGCTTATTTGGAAAGgtatgaataa ... cttcaaacagATTGTACCTTCCAATTGCCGATATGAAGTTTTGTCCACCAAAATTGAAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttacttctgtatgagtgtatattgtgttgatctttggttttcttcaaacagATTGTACCTTCCAATTGCCGATATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCGAAAGCAGAACCTATTCACTGGACATCTCTAGAATTCACCA
                            tgttgat  putative branch site (score: 4)
                                  tctttggttttcttc  CT-rich tract
                   tgtatatt  TA-rich tract