1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttcaattctctgctgcctgagttatgtatagaactatagaaggattaatattccagactaactggatattctgtgtgctcccctattgaatatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGATGTCCTGCTTCCTGGGAAGAACATGGTGGCAGCTGGTTACTGTATGTATG
species | Glycine max |
transcript | GLYMA16G28310.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACA ATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGATEST: gi|6070043|gb|AW099600.1|AW099600
genomic: GGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACAgtatgatccc ... tatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT
EST: ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACA ATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGATEST: gi|192304054|gb|FG993884.1|FG993884
genomic: ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACAgtatgatccc ... tatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT
EST: ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACA ATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAGCCAACCATAGAAGAT
genomic: ACCCATTGGATGGCTCGTCCAACATTGATTGTGGGGTTTCCATTGGCACAgtatgatccc ... tatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGAT
taatattccagactaactggatattctgtgtgctcccctattgaatatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGATGTCCTGCTTCCTGGGAAGAACATGGTGGCAGCTGGTTACTGTATGTATG
gactaac putative branch site (score: 1)
tattgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaattctctgctgcctgagttatgtatagaactatagaaggattaatattccagactaactggatattctgtgtgctcccctattgaatatgttgtagATTTTTGGGGTTTATGCGTTGAAAGATGTCCATGAACCAACCATAGAAGATGTCCTGCTTCCTGGGAAGAACATGGTGGCAGCTGGTTACTGTATGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - -ctctgct
- - - - - - - gcctgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtgtg