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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaaatttatctctgatatttcatcctctattggtttctgggttaagagacttatgttattcttgtatgctgttgataaatcttttatccccatctatctgtctttgccttttatctatttatcgttggacattaattcatgtttattgcagCCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG

Basic information

species Glycine max
transcript GLYMA16G27970.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27970.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------gtaggttaaatttatctctgatattt--catcctctattggtttctgggttaagagacttatgttattcttgtatgc-----tgttgataaatcttttatccccatctatctgtctttgccttttat--ctatttatcg--ttggacattaattcat-gttt----attgcagCCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG
                            | |  | |  ||| || |  | |||  | ||||  || ||  | |    |   |   || |  | | | |||  ||     ||| ||||       |||   ||| | | |  |  |   ||||    | || |   |  ||| | ||| |||| | || |    | ||||||||||||||  |||||||||||||||||||||| || || ||
gtaggtttctaacatttctgtaattttattgtctgatgttaactttttttttttccctccttgataggagtgtctcatgttatgtttgtactctccatgtgagcaagcatgtggatatgatgcatataagcatttctttcccacttttttttcctacaatatgatggattgtatatttattctttgtattggaaatgcagCCTTGATGAGTTACAAGTGAACTACAATAATGAGCGCTCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61241638|gb|DN591029.1|DN591029
EST:     GGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAA                         CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG
genomic: GGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAAgtaggttaaa ... tttattgcagCCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG
EST: gi|192326435|gb|FK017707.1|FK017707
EST:     GGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAA                         CCTTGATGAACTACAAGTGAGCTACAATAATGATCGTTCAAG
genomic: GGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAAgtaggttaaa ... tttattgcagCCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG
EST: gi|9900186|gb|BE609154.1|BE609154
EST:     GGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAA                         CCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG
genomic: GGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAAgtaggttaaa ... tttattgcagCCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtctttgccttttatctatttatcgttggacattaattcatgtttattgcagCCTTGATGAACTACAAGTGAACTACAATAATGATCGTTCAAG
                                 cattaat  putative branch site (score: 3)
                                  attaattcatgtttat  TA-rich tract