1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaattagattgattgtactattgatgatatttaatattatgtagagtgaccatctgaccgatattgcagtagattattaaaaccgtttcaattttccagGGATCAATCTCTGTCAGCATGTCCATACATCAGACGCTTTTTTGTTTCATATGTACCCACCTTACTTCAGGTGAAAAGGAAGGAGACGAACTTAAAAGAA
species | Glycine max |
transcript | GLYMA16G27760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAAAGGTTTCAACTGTTGGAGTTGGTGTAATGGGCTACATTGGTAACAAG GGATCAATCTCTGTCAGCATGTCCATACATCAGACGCTTTTTTGTTTCATA
genomic: TAAAGGTTTCAACTGTTGGAGTTGGTGTAATGGGCTACATTGGTAACAAGgtctttttct ... aattttccagGGATCAATCTCTGTCAGCATGTCCATACATCAGACGCTTTTTTGTTTCATA
agtgaccatctgaccgatattgcagtagattattaaaaccgtttcaattttccagGGATCAATCTCTGTCAGCATGTCCATACATCAGACGCTTTTTTGTTTCATATGTACCCACCTTACTTCAGGTGAAAAGGAAGGAGACGAACTTAAAAGAA
atctgac putative branch site (score: 3)
ttttcc putative PPT
agtagattattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaattagattgattgtactattgatgatatttaatattatgtagagtgaccatctgaccgatattgcagtagattattaaaaccgtttcaattttccagGGATCAATCTCTGTCAGCATGTCCATACATCAGACGCTTTTTTGTTTCATATGTACCCACCTTACTTCAGGTGAAAAGGAAGGAGACGAACTTAAAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - tatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - ccatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagta