1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagaccggagatgattgttgtaccattaatatgctggaaatttgagtttcctttgttagcttttgatcttgtagatattaatctaacaatttcatgacagTATAATTGATGACGAAGTTCTCTTAAAAATACTCGAGCTTCCTATATTGGTGATACTGGATGAAGCATACATTGAGTTTTCAGCAATTGAATCAAGGATG
species | Glycine max |
transcript | GLYMA16G27220.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCCAGATGGAAG TATAATTGATGACGAAGTTCTCTTAAAAATACTCGAGCTTCCTATATTGGTEST: gi|192322955|gb|FK016686.1|FK016686
genomic: GAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCCAGATGGAAGgtaactgtca ... ttcatgacagTATAATTGATGACGAAGTTCTCTTAAAAATACTCGAGCTTCCTATATTGGT
EST: GAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCCAGATGGAAG TATAATTGATGACGAAGTTCTCTTEST: gi|209716352|gb|BW650751.1|BW650751
genomic: GAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCCAGATGGAAGgtaactgtca ... ttcatgacagTATAATTGATGACGAAGTTCTCTT
EST: GAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCCAGATGGAAG TATAATTGATGAEST: gi|254330365|gb|GR841630.1|GR841630
genomic: GAGAAGCCCAAATGCATATTTTTAACATCTCCAAATAATCCAGATGGAAGgtaactgtca ... ttcatgacagTATAATTGATGA
EST: TAATCCAGATGGAAG TATAATTGATGACGAAG-TCTC-T-AAAATACTCGAGCTTCCTATATTGGT
genomic: TAATCCAGATGGAAGgtaactgtca ... ttcatgacagTATAATTGATGACGAAGTTCTCTTAAAAATACTCGAGCTTCCTATATTGGT
gtttcctttgttagcttttgatcttgtagatattaatctaacaatttcatgacagTATAATTGATGACGAAGTTCTCTTAAAAATACTCGAGCTTCCTATATTGGTGATACTGGATGAAGCATACATTGAGTTTTCAGCAATTGAATCAAGGATG
atctaac putative branch site (score: 2)
tagatattaatctaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaccggagatgattgttgtaccattaatatgctggaaatttgagtttcctttgttagcttttgatcttgtagatattaatctaacaatttcatgacagTATAATTGATGACGAAGTTCTCTTAAAAATACTCGAGCTTCCTATATTGGTGATACTGGATGAAGCATACATTGAGTTTTCAGCAATTGAATCAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - -tgttgta
- - - - - - - - - - - ccattaa
- - - - - - - - - - - - - - - -tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttttg