1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...actcttaaatgcttctgatatattattgacgttcacattcttaattaaaattttaggatgtttgtaatatgagtgttgttgctgttgtctgattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAACATGCTGTGGTTCTTGGAGGAGG
species | Glycine max |
transcript | GLYMA16G27210.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCAGGACAG GAGTTGGGTATAACTTCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAAEST: gi|27424557|gb|CA936077.1|CA936077
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAAEST: gi|254323260|gb|GR840065.1|GR840065
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAAEST: gi|9901924|gb|BE610892.1|BE610892
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAAEST: gi|151394106|gb|EV263977.1|EV263977
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAAEST: gi|8670051|gb|BE191158.1|BE191158
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAG GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAAEST: gi|193492241|gb|FK455267.1|FK455267
genomic: TATTGATTGCAACTGGCAGCAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
EST: CAGGGCTCAACGTCCAAATATTCCTGGACAG GAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
genomic: CAGGGCTCAACGTCCAAATATTCCTGGACAGgtgaatttgc ... gattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAA
taaaattttaggatgtttgtaatatgagtgttgttgctgttgtctgattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAACATGCTGTGGTTCTTGGAGGAGG
gtctgat putative branch site (score: 4)
tttgtaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcttaaatgcttctgatatattattgacgttcacattcttaattaaaattttaggatgtttgtaatatgagtgttgttgctgttgtctgattgtgcagGAGTTGGGTATAACATCAGACGAGGCACTAAGTTTAGAGGATCTTCCAAAACATGCTGTGGTTCTTGGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -tgcttct
- - - - - - - - - - - - - - - - -cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct