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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacaactgcatatgattatgctagtttcagtgaatgtcccatgtattgtcaaagttaaaaaagattcactaccttcatgcagATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAG

Basic information

species Glycine max
transcript GLYMA16G27200.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314035|gb|FK007375.1|FK007375
EST:     TCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGC                         ATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCC
genomic: TCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCgtgagtacaa ... cttcatgcagATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCC
EST: gi|31460192|gb|CD402580.1|CD402580
EST:     TCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGC                         ATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCC
genomic: TCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCgtgagtacaa ... cttcatgcagATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCC
EST: gi|192314036|gb|FK007376.1|FK007376
EST:     TCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGC                         ATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCC
genomic: TCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCgtgagtacaa ... cttcatgcagATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgaatgtcccatgtattgtcaaagttaaaaaagattcactaccttcatgcagATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAG
                                         ctaccttc  CT-rich tract
                       aaagttaaaaaagatt  TA-rich tract