1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggggatttttccaaccaggattagactgttggtcttctgaatcattcttcttaatgttttattggacctatctcatctgtaccttgtattaattttgcagTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG
species | Glycine max |
transcript | GLYMA16G27050.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCGACAACCAT TTCTTTAAAAAAGAAACTGAAAGATEST: gi|21888883|gb|BQ742096.1|BQ742096
genomic: GGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCGACAACCATgtcagtgata ... aattttgcagTTCTTTAAAAAAGAAACTGAAAGAT
EST: GGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCGACAACCAT TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGEST: gi|192324538|gb|FK016789.1|FK016789
genomic: GGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCGACAACCATgtcagtgata ... aattttgcagTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG
EST: GGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCGACAACCAT TTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAGEST: gi|192294341|gb|FG987270.1|FG987270
genomic: GGGTGTGGAAAAGGATCAGGTGTTGACCGGTCAAGAACAGCGACAACCATgtcagtgata ... aattttgcagTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG
EST: GGTGTGGAAAAGGATCAGGTGTTTGACCGGTCAAGAACAGCGACAACCAT TTTCTTTAAAAAAGAAACTGAAAGATAAAATGGGCTGAATTTCAG
genomic: GGTGTGGAAAAGGATCAGGTGTT-GACCGGTCAAGAACAGCGACAACCATgtcagtgata ... aattttgcagTT-CTTTAAAAAAGAAACTGAAAGATAAAATGG-CTGAATTTCAG
tcttcttaatgttttattggacctatctcatctgtaccttgtattaattttgcagTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG
tattaat putative branch site (score: 2)
ttaatgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggatttttccaaccaggattagactgttggtcttctgaatcattcttcttaatgttttattggacctatctcatctgtaccttgtattaattttgcagTTCTTTAAAAAAGAAACTGAAAGATAAAATGGCTGAATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - ccaacca
- - - - - - - - - - - - actgttg
- - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtacc