Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT

Basic information

species Glycine max
transcript GLYMA16G27010.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27010.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 3'ss of exon 5
gttggcattattatggaccctatttgtatttacatatgtacattatgcacgtccttagtattgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT
                      |  |||   ||  ||  ||       ||     |  |||| |   | ||| |    |  ||  | |   |  ||  | |||||  ||||  ||||||||||||||| |||||| |||||||||| ||||| |||||||| ||| ||||||||||||| |||||| | |||||||| ||||| || ||||| |
---------------------gtcagtaaccactaattcac------tactattctgatattttctgtgtttgtgtacaatattgtgaccttgatt--tactttca-atta--gGCTGTAATGGCTCTAAGAGATGCAATCAAACGGCACTTGAAGCTTCCCCATGGCTATGTTATGGAATACAAGGCTCATGATGCTTCTCTCCGTGACAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31464192|gb|CD406220.1|CD406220
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193674700|gb|FK620368.1|FK620368
EST:     GCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: GCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|57575959|gb|CX548930.1|CX548930
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|58021292|gb|CX708033.1|CX708033
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|151394261|gb|EV264132.1|EV264132
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|37995997|gb|CF807586.1|CF807586
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|31468281|gb|CD410309.1|CD410309
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|58020447|gb|CX707189.1|CX707189
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193363616|gb|FK330878.1|FK330878
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|16105854|gb|BI893594.1|BI893594
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|31462859|gb|CD404887.1|CD404887
EST:     TGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCCAACGTCACTTAAAGCTTCCACAT
genomic: TGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|192295554|gb|FG988128.1|FG988128
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGAT-CAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|193358302|gb|FK324046.1|FK324046
EST:     CGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: CGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|13788932|gb|BG651523.1|BG651523
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGTGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|207834470|gb|GD807715.1|GD807715
EST:     CGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: CGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|208024801|gb|GD825131.1|GD825131
EST:     AATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: AATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|7146601|gb|AW508523.1|AW508523
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|207680098|gb|GD663712.1|GD663712
EST:     AATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: AATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|58017961|gb|CX704703.1|CX704703
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|10255799|gb|BE823565.1|BE823565
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
EST: gi|254329999|gb|GR839552.1|GR839552
EST:     TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT
genomic: TCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCGGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttccttttttttagaagcatccttagtattgttcctgctttctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCACATAGCTATGTTATGGAGTACAAGCCCCATGATGCCTCTCTGCGAGACAATT
                                ttgttcctgctttctc  CT-rich tract
        ttttttttagaa  TA-rich tract