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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcaagtagttcaaggtcctacatattaatttaatcatattaaatttatacagtgacttgctttgttagatttacactcttcaattcattatacttacagGTACTTGATTATGTTGCATCTATGCTAGAAATTACGAAAGAAGAGCTTGCTGAATTAAGTTACCAGAATGCAGTCCGGTTATTATCCTATGAAGGTTCGA

Basic information

species Glycine max
transcript GLYMA16G26700.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669075|gb|BE190177.1|BE190177
EST:     CTTCGATGTTGCCAAAGGAAACACTCAATCATCCCGCAAACATTCATAAT                         GTACTTGATTATGTTGCATCTATGCTAGAAATTACGAAAGAAGAGCTTGCT
genomic: CTTCGATGTTGCCAAAGGAAACACTCAATCATCCCGCAAACATTCATAATgtatgtagct ... atacttacagGTACTTGATTATGTTGCATCTATGCTAGAAATTACGAAAGAAGAGCTTGCT
EST: gi|193462881|gb|FK427352.1|FK427352
EST:     CTTCGATGTTGCCAAAGGAAACACTCAATCATCCCGCAAACATTCATAAT                         GTACTTGATTATGTTGCATCTATGCTAGAAATTACGAA
genomic: CTTCGATGTTGCCAAAGGAAACACTCAATCATCCCGCAAACATTCATAATgtatgtagct ... atacttacagGTACTTGATTATGTTGCATCTATGCTAGAAATTACGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatacagtgacttgctttgttagatttacactcttcaattcattatacttacagGTACTTGATTATGTTGCATCTATGCTAGAAATTACGAAAGAAGAGCTTGCTGAATTAAGTTACCAGAATGCAGTCCGGTTATTATCCTATGAAGGTTCGA
                                     aattcattatactta  TA-rich tract