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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcagcttttagtttgcagcaaaaataagtgactagttgcagtattggctttctagattttaagaaactcttattttttatgtttttgctgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGATGGCTACAGTCTGGAAAATGAGCCTTTA

Basic information

species Glycine max
transcript GLYMA16G26110.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204171|gb|BI426939.1|BI426939
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|16343838|gb|BI969433.1|BI969433
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|9439913|gb|BE440425.1|BE440425
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|31307808|gb|CD393011.1|CD393011
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTGTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|208059195|gb|GD859423.1|GD859423
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|193334578|gb|FK298900.1|FK298900
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|207757997|gb|GD727749.1|GD727749
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|209707169|gb|BW656787.1|BW656787
EST:     AGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: AGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
EST: gi|8670269|gb|BE191376.1|BE191376
EST:     GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAG                         ACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG
genomic: GACCTGAGTGAAGATTTTGCTTTCTCCACATTTTTTCCAGAATTTTTAAGgtaatttcag ... tgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggctttctagattttaagaaactcttattttttatgtttttgctgccttgtagACCGGTCATTGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGATGGCTACAGTCTGGAAAATGAGCCTTTA
                                      tttttgct  CT-rich tract
         tagattttaagaaact  TA-rich tract