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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattattactctcaaaacaaatttccctttattagttttccatttctcttgattgaggttataatatgctcttttttggtttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAG

Basic information

species Glycine max
transcript GLYMA16G25820.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25820.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G66600.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaattattattactctcaaaacaaatttccctttattagttttccatttctcttgattgaggtta--taatatgctcttttttggtttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAG
||||    | || || ||||    || ||  ||   ||   |||| ||    ||  |||  ||||   ||  |   | | |||   | | |  ||||| ||||| |||||||| |||||||| ||||||||||| || ||||| |||||  | |||
gtaaaacctctttctttcaa---gaacttatctcagtt---tttctatacgcctacattttggtttcttatcaaaatttctttgaatatattttagGCGTTTTTAGCTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285798|gb|BE023357.1|BE023357
EST:     AGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCAT                         GCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTT
genomic: AGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattatta ... tttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttccatttctcttgattgaggttataatatgctcttttttggtttctaatagGCATTTTTGGCTTATGGAATTCCACAAAACAATGTGAAAAGGGTCTTCCTTCTGTTAAAG
            tcttgat  putative branch site (score: 4)
                                  ctcttttttggtttct  putative PPT
                        ttataatat  TA-rich tract