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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatgcttgcagctaaagtcggaattgaattggtttaattaaaaacatctcaatctttttctaaactgtttttggctttggtctgatgacttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG

Basic information

species Glycine max
transcript GLYMA16G25600.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402272|gb|EV272085.1|EV272085
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAGCCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|23064117|gb|BU578890.1|BU578890
EST:     TGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACATG                         TANT-TGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: TGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACA-Ggtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|20448522|gb|BQ252646.1|BQ252646
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|7924295|gb|AW830321.1|AW830321
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
EST: gi|9565806|gb|BE475315.1|BE475315
EST:     GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAG                         GAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
genomic: GTGGTTCAGAGGGTTCATCAAATGCTAGCGATGAGAATACTAACCAACAGgtatgtaaca ... ttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctcaatctttttctaaactgtttttggctttggtctgatgacttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG
                                            cttctccgt  CT-rich tract
      aatctttttctaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agatgcttgcagctaaagtcggaattgaattggtttaattaaaaacatctcaatctttttctaaactgtttttggctttggtctgatgacttctccgtagGAATCAGCTGCAAATAAGAAGGGAAGCTTTGACCTGATGCTTGTTGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - gcttgca
- - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgac