1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atttcactcttttgcttagtagctgtcaatacttgaacccaagcaaatctgcatcttaaattttcataaatgtgatcctaaaaaattagttcatctgcagATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAG
species | Glycine max |
transcript | GLYMA16G25400.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAG ATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAEST: gi|213600159|gb|DB979780.1|DB979780
genomic: AATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAGgttgtatgct ... tcatctgcagATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACA
EST: AATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAG ATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAEST: gi|193672081|gb|FK616323.1|FK616323
genomic: AATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAGgttgtatgct ... tcatctgcagATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACA
EST: AATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAG ATGCATACCATACTAGATGAGAATCATTCTCAGAGGCCAGGTGTTGGAGAC
genomic: AATGCTTCAGAAATGTATGTGAGCTTGATATCGTGTTCAACTATAGTAAGgttgtatgct ... tcatctgcagATGCATACCATACTAGATGAGA-TCATTCTCGGAGGCCAGGTGTTGGAGAC
aatctgcatcttaaattttcataaatgtgatcctaaaaaattagttcatctgcagATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAG
tcctaaa putative branch site (score: 2)
ttcatct putative PPT
atcttaaattttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcactcttttgcttagtagctgtcaatacttgaacccaagcaaatctgcatcttaaattttcataaatgtgatcctaaaaaattagttcatctgcagATGCATACCATACTAGATGAGATCATTCTCGGAGGCCAGGTGTTGGAGACAAGTTCAAACGAGGTTATGAAGGCTATTGAAGAAATATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA