1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taccaaccaagctgcattgttttcatcgttacattttattcattaattgaatgtttctcttcgcagataacttagattacatttgtgattattatgacagGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
species | Glycine max |
transcript | GLYMA16G25380.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGCAGAG GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGEST: gi|208297974|gb|GE093231.1|GE093231
genomic: ACAGTGCAGAGgtacaagttg ... attatgacagGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
EST: GGCTGGGACAGTGCAGAG GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGEST: gi|192321595|gb|FK013939.1|FK013939
genomic: GGCTGGGACAGTGCAGAGgtacaagttg ... attatgacagGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
EST: TGACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAG GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATTTGEST: gi|192321596|gb|FK013940.1|FK013940
genomic: TAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGgtacaagttg ... attatgacagGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
EST: TGACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAG GTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
genomic: TAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGgtacaagttg ... attatgacagGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
attgaatgtttctcttcgcagataacttagattacatttgtgattattatgacagGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
agataac putative branch site (score: 3)
atttgtgattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccaaccaagctgcattgttttcatcgttacattttattcattaattgaatgtttctcttcgcagataacttagattacatttgtgattattatgacagGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- ccaacca
- - - - - gctgcat