Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatcaagttcatttttttatttgttatatagtcacctttccctctcaaattgaaggaataactgacatccttttgtcaaaatatttgcaaatattttcttatgtccaattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAA

Basic information

species Glycine max
transcript GLYMA16G24870.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018987|gb|CX705729.1|CX705729
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATCCAA
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatca ... caattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
EST: gi|58019195|gb|CX705937.1|CX705937
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatca ... caattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
EST: gi|214007313|gb|DB985849.1|DB985849
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatca ... caattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgacatccttttgtcaaaatatttgcaaatattttcttatgtccaattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAA
 aactgac  putative branch site (score: 2)
                                                ttctc  putative PPT
          ttttgtcaaaatattt  TA-rich tract