1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgacatttccttcctttaatgtttacatacgtaacaatggatgtgttctgctttcatatttttatttagtttccttttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCACAGGATGAATGGTCAGCCAACTTGAAAACAATTCTTGATTGGTCTCCCT
species | Glycine max |
transcript | GLYMA16G24450.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTAAGCCAATTATTTATAGCTCAEST: gi|193302464|gb|FK267850.1|FK267850
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACACATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|207784186|gb|GD755039.1|GD755039
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193375638|gb|FK341695.1|FK341695
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|207772650|gb|GD744446.1|GD744446
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|208242910|gb|GE041544.1|GE041544
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193471804|gb|FK434833.1|FK434833
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193551643|gb|FK506846.1|FK506846
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193481340|gb|FK447831.1|FK447831
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CTATACCTTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|207777800|gb|GD749763.1|GD749763
genomic: CTATACC-TTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: ATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATAGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193708757|gb|FK648551.1|FK648551
genomic: ATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAANG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193331997|gb|FK301969.1|FK301969
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193642573|gb|FK591535.1|FK591535
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTGTACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|208029404|gb|GD827862.1|GD827862
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CTATACCTTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|208060882|gb|GD858792.1|GD858792
genomic: CTATACC-TTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCAEST: gi|193605607|gb|FK559035.1|FK559035
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
EST: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG ATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
taacaatggatgtgttctgctttcatatttttatttagtttccttttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCACAGGATGAATGGTCAGCCAACTTGAAAACAATTCTTGATTGGTCTCCCT
acgtaac putative branch site (score: 3)
tttttatttagtttcc putative PPT
tttcatatttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacatttccttcctttaatgtttacatacgtaacaatggatgtgttctgctttcatatttttatttagtttccttttctttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCACAGGATGAATGGTCAGCCAACTTGAAAACAATTCTTGATTGGTCTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG