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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatgttcctatttttgtaattttgtccaagggaagagaactttacagcacctcatcgctaagattcctaaataatgtgattcttcttcagACAATTGAAAGTTCTGCTCGTGAATTTCTGGGAAATGACAAAATGAGCTCCCTTTCTGCTTCTGTG

Basic information

species Glycine max
transcript GLYMA16G24250.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24250.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 6
gtacttatgttcctatttttgtaattttgtccaagggaagagaactttaca-gcacctcatcgctaagattcctaaataatgtgattcttcttcagACAATTGAAAGTTCTGCTCGTGAATTTCTGGGAAATGACAAAATGAGCTCCCTTTCTGCTTCTGTG
       | |  ||||     | ||  ||    |   |   ||| || | | |||    ||| |      || ||  ||||   | | |||| |||||| ||||||||||||||||||| ||| | || ||||||||    ||    ||| |  || |||||
------gtatgactatgaccttcat--tgattgacatagctgaatttcagatgcaagatatctcc-----tcttacttaattgtagttttctacagACAGTTGAAAGTTCTGCTCGTGAGTTTTTAGGCAATGACAATTCAAGTGTTCTTACATCTACTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaactttacagcacctcatcgctaagattcctaaataatgtgattcttcttcagACAATTGAAAGTTCTGCTCGTGAATTTCTGGGAAATGACAAAATGAGCTCCCTTTCTGCTTCTGTG
                             tcctaaa  putative branch site (score: 2)
                                            ttcttcttc  putative PPT
                                taaataatgtgatt  TA-rich tract