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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattctctcattcatatgattttctatgtttagggcaagcaaatttaaatcccttaaagtgaagacatatgcccatttttaacttattatgaagccatcacaccacacgtttacattttctgttgcacgcttcactgataaaccaatgcctcatcatttgcagGTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATGATGAATTCATTAGTTAAATTGACGTCATGTGCCCTAGTTTGGCTGAGTT

Basic information

species Glycine max
transcript GLYMA16G23920.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193655798|gb|FK601456.1|FK601456
EST:     TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAG                         GTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG
genomic: TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAGgtcattctct ... tcatttgcagGTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG
EST: gi|14999956|gb|BI320770.1|BI320770
EST:     TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAG                         GTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG
genomic: TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAGgtcattctct ... tcatttgcagGTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttacattttctgttgcacgcttcactgataaaccaatgcctcatcatttgcagGTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATGATGAATTCATTAGTTAAATTGACGTCATGTGCCCTAGTTTGGCTGAGTT
                        cactgat  putative branch site (score: 3)
                                        cctcatc  putative PPT
      attttct  TA-rich tract