1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatataattgaatgaattttttcttttcatacccaatggttaagttaattggtagtcataaatttatctttgacctttattgcagAACGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCACAAAAGGCATGTTCAATATTGT
species | Glycine max |
transcript | GLYMA16G23340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTGATTAATGCACCTGCTTACATTGAATGCAGTTCGAAATCACAACAG AACGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAEST: gi|192330642|gb|FK021961.1|FK021961
genomic: AGCTGATTAATGCACCTGCTTACATTGAATGCAGTTCGAAATCACAACAGgtatataatt ... tttattgcagAACGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCA
EST: AGCTGATTAATGCACCTGCTTACATTGAATGCAGTTCGAAATCACAACAG AACGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCA
genomic: AGCTGATTAATGCACCTGCTTACATTGAATGCAGTTCGAAATCACAACAGgtatataatt ... tttattgcagAACGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCA
acccaatggttaagttaattggtagtcataaatttatctttgacctttattgcagAACGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCACAAAAGGCATGTTCAATATTGT
ctttgac putative branch site (score: 4)
cctttatt CT-rich tract
tcataaatttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataattgaatgaattttttcttttcatacccaatggttaagttaattggtagtcataaatttatctttgacctttattgcagAACGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCACAAAAGGCATGTTCAATATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG