Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttctaactttctatcctttttttttatgttttatatttccccacttgttttacttttcaaggagtcagatctgtcttttagcataatatgtagtactaattacagGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA

Basic information

species Glycine max
transcript GLYMA16G20260.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G20260.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G146697_T03 (Zea mays), 3'ss of exon 7
gtagtttctaactttctatcctttttttttatgttttatatttccccacttgtttta-cttttcaaggagtcagatctgtcttttagcataatatgtagtactaattacagGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
                                    ||  | |   | |||||  || || ||| ||     || |  |   | |   ||  |   |  |   |  | ||| |||| || |||||| ||||||||||||| ||||| |||||||| ||||| ||||| ||||| | ||||||| | |||||||| ||||||||  |    |
-----------------------------------gtagttgttttc-cttgtcctatctattccagattatagtttcgggatattatatgttgattcatttcatgttcagATAATATGCTGGGTTTTGGGGGAATATGGAACAGCAGATGGAAAATATTCAGCTTCTTATATTATTGGGAAGTTGTGTGATGTGGCAGAGGCCCACCTCA

upper sequence: GLYMA16G20260.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 6
gtagtttctaactttctatcctttttttttatgttttatatttccccacttgttttacttttcaaggagtcagatctgtcttttagcataatatgtagtactaattacagGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
                  |  || |||||  |||  | | | | || |  | |   | ||||   |||          | |||||   | ||   |  |  |     ||| |||| || |||||  ||||||||||||| ||||| ||||||||  |||| ||||| ||||| | ||||||  | |||||||| ||||||||  |    |
-----------------gtagttatttttcttgtcctttctattccaaactat---agtttt--ggga----------tgttttaagttgattcattatgtt-----cagATAATATGCTGGGTGTTGGGGGAATATGGAACAGCAGATGGAAAACATTCGGCTTCTTATATTATTGGGAAATTGTGTGATGTGGCAGAGGCCCACCTCA

upper sequence: GLYMA16G20260.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G31730.1 (Arabidopsis thaliana), 3'ss of exon 6
gtagtttctaactttctatcctttttttttatgttttatatttccccacttgttttacttttcaaggagtcagatctgtcttttagcataatatgtagtactaattacagGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
                      ||  |||| |  | |  || || || | |    |  |||||    |   |  | ||| | |||  ||    | ||     || | ||||| || | ||||||| |||| |||||||||||||||||||| || |||||||| |||||||| | ||| ||||| || ||||| ||||| ||||| ||||
---------------------gttgattttgttctctg-atctctccgcataccatttttttccgcaacgaatttttgtttcttactattgggttta-----aacttcagGTCATTTCTTGGGTTTTGGGAGAATATGGCACAGCTGATGGGAAATATTCTGCCTCCTATATTAGTGGAAAGCTGTGCGATGTGGCAGATGCATACTCAA

upper sequence: GLYMA16G20260.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 7
gtagtttctaactt-tctatcctttttttttatgttttatatttccccacttgttttacttttcaaggagtcagatctgtcttttagcataatatgtagtactaat-tacagGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
|||  ||||    | |||   |  | ||||| |  ||| | ||||  ||  |     | | ||||   |        ||| | ||| | || |   | || || || ||||||| || ||||||||| |||| || ||||| || || | |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||  ||||||
gtacattctgttctatctggacactatttttgtcatttgt-tttctgcatgtaggc-attattcacaaaact---cttgtttattatcttagttgttggttctgatctacagGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttttcaaggagtcagatctgtcttttagcataatatgtagtactaattacagGTAATCTGTTGGGTTCTGGGGGAATATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGCTATGTGATGTTGCAGAGGCATATTCAA
                                           tactaat  putative branch site (score: 1)
                         ttttagcataatat  TA-rich tract