Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatattgaccttaaatttagcttctaagcataaaaaaatggagaagtggccaaatgagcaatgccccagaagtggacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCAACTAGCCACTGA

Basic information

species Glycine max
transcript GLYMA16G19390.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19390.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 14
gtacatattgaccttaaatttagcttctaagcataaaaaaatggagaagtggccaaatgagcaatgccccagaagtggacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCAACTAGCCACTGA-------------------------------------
                        |  ||| ||   ||    |     |  |   |        ||||    || |   |    | |||   |  || |  ||||| |   |    | ||||    ||||||||| |||||||||||| | ||||||||| | ||||| || ||||| ||||||||||| |||                                     
------------------------tcataatca--gaaccccgttcctggagttgatctgaatttgccattcaattaatccatctgttat--tggatga--ctaaagtttgtctttaatcgttaccgcagGCTAGCGCACAGCCATTTCTTGTGCTTGGTCTTTTGGTGACGGCTCTGGCAACTAGCCATTGATTCACGTGGCAACTACCATATGGAGCAAGGAGAGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCAACTAGCCACTGA
                             aactaat  putative branch site (score: 2)
        tttttagagtaaatta  TA-rich tract