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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaatgaaatttctaactttctaattcaggcataatcaatgtgtaatttttttccctctgactaagcttgcatgaatacagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACTTGGCAAAATATGTTTTGGGAATTTTAGG

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 7
-----gtcagtaatgaaatttctaact---ttctaattcaggcataatcaatgtgta-atttttttccctctgactaagctt---gcatgaata---cagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACTTGGCAAAATATGTTTTGGGAATTTTAGG
      || |  || | |||||| | |    ||||  |||   | | ||  | |  | ||||    | ||   |||||  ||   || | |||    ||||||||||| ||||||||| | || || ||||| ||||||||||||  ||| ||||| ||||||||
gtggattctgagat-acatttctgattgacctctatatcaaataaactctcttttgatatttcaacctcttctactaattttcctgcctaaatctttcagGCTGAGACTACATGGGCTTTGACTGTCCTTGGCTACTTGGCAAAACTTGTGTTGGGTATTTTAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggcataatcaatgtgtaatttttttccctctgactaagcttgcatgaatacagGCTGAGACAACATGGGCTCTAACAGTTCTTGGTTACTTGGCAAAATATGTTTTGGGAATTTTAGG
                             ctctgac  putative branch site (score: 3)
     ataatcaatgtgtaat  TA-rich tract