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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagggtataacttttggctggtagcatttcatataccttttccggaagtcctgctgatattacgtacttccctaaattttcagGTTCTTGAACCTAAATCTTTATGTAAATTACTGGATATCATTGACTCTAG

Basic information

species Glycine max
transcript GLYMA16G17830.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9566139|gb|BE475648.1|BE475648
EST:     GGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAG                         GTTCTTGAACCTAAATCTTTATGTAAATTACTGGATATCATTGACTCTAG
genomic: GGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggta ... aaattttcagGTTCTTGAACCTAAATCTTTATGTAAATTACTGGATATCATTGACTCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatataccttttccggaagtcctgctgatattacgtacttccctaaattttcagGTTCTTGAACCTAAATCTTTATGTAAATTACTGGATATCATTGACTCTAG
                                         ccctaaa  putative branch site (score: 3)
                                      cttcccta  CT-rich tract
                                            taaattttca  TA-rich tract