1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgtttgtcaactcaatactttattattattgtaaatgtataatgcactatgttatatgtatttaatttaataaataatgtgtcatgacctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTTG
species | Glycine max |
transcript | GLYMA16G17580.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|193718080|gb|FK653378.1|FK653378
genomic: ATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: ATACTGAGTATTGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|193495067|gb|FK460199.1|FK460199
genomic: ATACTGAGTA-TGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|208299186|gb|GE100085.1|GE100085
genomic: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: GTTCACAACCACCATTATTACTGTAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|193599933|gb|FK550734.1|FK550734
genomic: GTTCACAACCACCA-TA-TACTG-AGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|208169630|gb|GD967787.1|GD967787
genomic: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: GGAGATCTAGTTTCACAACCGCCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|193345679|gb|FK313762.1|FK313762
genomic: GGAGATC-AG-TTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: AGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|193423617|gb|FK387282.1|FK387282
genomic: AGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: GGGAGATCTAGTTCACAACCACCATATACTGAGTATGTCACCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|207727178|gb|GD701128.1|GD701128
genomic: GGGAGATC-AGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCGGTCCCATCTATATAGCTCTAAAGTEST: gi|193651862|gb|FK595565.1|FK595565
genomic: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: AGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|12690052|gb|BG156388.1|BG156388
genomic: AGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTEST: gi|193411420|gb|FK381551.1|FK381551
genomic: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
EST: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTG GTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
genomic: CGGGAGATCAGTTCACAACCACCATATACTGAGTATGTCTCCACACGGTGgtatgtttgt ... ctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGT
gcactatgttatatgtatttaatttaataaataatgtgtcatgacctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTTG
atttaat putative branch site (score: 4)
cctct putative PPT
atgttatatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttgtcaactcaatactttattattattgtaaatgtataatgcactatgttatatgtatttaatttaataaataatgtgtcatgacctctgattagGTATCGTGCTCCTGAAGTCCTGCTTCAGTCCCATCTATATAGCTCTAAAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG