1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagttttacaaattcaaaaggattttgtaatgtaaattagtaggagaatattaatatttcataaattttatatgctaattttccttttgctgatgtttataatatgaatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT
species | Glycine max |
transcript | GLYMA16G17190.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGEST: gi|19053982|gb|BM732649.1|BM732649
genomic: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCGgtaagtttta ... aatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
EST: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGEST: gi|6567013|gb|AW234640.1|AW234640
genomic: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCGgtaagtttta ... aatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
EST: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGACEST: gi|21675217|gb|BQ627568.1|BQ627568
genomic: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCGgtaagtttta ... aatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
EST: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGEST: gi|298194576|gb|HO043048.1|HO043048
genomic: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCGgtaagtttta ... aatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
EST: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGEST: gi|19935349|gb|BQ080379.1|BQ080379
genomic: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCGgtaagtttta ... aatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
EST: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGEST: gi|17519199|gb|BM188241.1|BM188241
genomic: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCGgtaagtttta ... aatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
EST: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCG AAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
genomic: GGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCGgtaagtttta ... aatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAG
taaattttatatgctaattttccttttgctgatgtttataatatgaatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT
tgatgtttataatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttacaaattcaaaaggattttgtaatgtaaattagtaggagaatattaatatttcataaattttatatgctaattttccttttgctgatgtttataatatgaatttatcagAAAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTGCTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA