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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggactttgataatttccaacttttgtctttgactagagtaagttttttaattcacttactgaaacttgtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGCGATCGATTCAAATCACTACTACCTGCAACAACTAAAGTGAAATGCCTTG

Basic information

species Glycine max
transcript GLYMA16G17190.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346702|gb|BI972297.1|BI972297
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     GGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: GGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|19053982|gb|BM732649.1|BM732649
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|6567013|gb|AW234640.1|AW234640
EST:     CTGTGGTCGTTGACGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTTAATGGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|21675217|gb|BQ627568.1|BQ627568
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|14011702|gb|BG726624.1|BG726624
EST:     CTGTGGTCTTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|298194576|gb|HO043048.1|HO043048
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|19935349|gb|BQ080379.1|BQ080379
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
EST: gi|17519199|gb|BM188241.1|BM188241
EST:     CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAAT                         GCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC
genomic: CTGTGGTCGTTGAGGATTTATTAGCAAAAGGAATGAAAAATGCTCAAAATgtaagggact ... gtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctttgactagagtaagttttttaattcacttactgaaacttgtaactgcagGCAATTATCTCCGGATGTTCAGCTGGAGGATTGGCTTCTATTCTAAATTGCGATCGATTCAAATCACTACTACCTGCAACAACTAAAGTGAAATGCCTTG
                                           ttgtaac  putative branch site (score: 2)
              agtaagttttttaatt  TA-rich tract